Phylogenetic analysis of the first four SARS-CoV-2 cases in Chile.
Identifieur interne : 000412 ( Main/Exploration ); précédent : 000411; suivant : 000413Phylogenetic analysis of the first four SARS-CoV-2 cases in Chile.
Auteurs : Andrés E. Castillo [Chili] ; Bárbara Parra [Chili] ; Paz Tapia [Chili] ; Alejandra Acevedo [Chili] ; Jaime Lagos [Chili] ; Winston Andrade [Chili] ; Loredana Arata [Chili] ; Gabriel Leal [Chili] ; Gisselle Barra [Chili] ; Carolina Tambley [Chili] ; Javier Tognarelli [Chili] ; Patricia Bustos [Chili] ; Soledad Ulloa [Chili] ; Rodrigo Fasce [Chili] ; Jorge Fernández [Chili]Source :
- Journal of medical virology [ 1096-9071 ] ; 2020.
Abstract
The current pandemic caused by the new coronavirus is a worldwide public health concern. To aboard this emergency, and like never before, scientific groups around the world have been working in a fast and coordinated way to get the maximum of information about this virus when it has been almost 3 months since the first cases were detected in Wuhan province in China. The complete genome sequences of around 450 isolates are available, and studies about similarities and differences among them and with the close related viruses that caused similar epidemics in this century. In this work, we studied the complete genome of the first four cases of the new coronavirus disease in Chile, from patients who traveled to Europe and Southeast Asia. Our findings reveal at least two different viral variants entries to Chilean territory, coming from Europe and Asia. We also sub-classified the isolates into variants according to punctual mutations in the genome. Our work contributes to global information about transmission dynamics and the importance to take control measures to stop the spread of the infection.
DOI: 10.1002/jmv.25797
PubMed: 32222995
Affiliations:
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last="Castillo">Andrés E. Castillo</name><affiliation wicri:level="1"><nlm:affiliation>Molecular Genetics Sub Department, Institute of Public Health of Chile, Santiago, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Molecular Genetics Sub Department, Institute of Public Health of Chile, Santiago</wicri:regionArea><wicri:noRegion>Santiago</wicri:noRegion></affiliation></author><author><name sortKey="Parra, Barbara" sort="Parra, Barbara" uniqKey="Parra B" first="Bárbara" last="Parra">Bárbara Parra</name><affiliation wicri:level="1"><nlm:affiliation>Molecular Genetics Sub Department, Institute of Public Health of Chile, Santiago, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Molecular Genetics Sub Department, Institute of Public Health of Chile, Santiago</wicri:regionArea><wicri:noRegion>Santiago</wicri:noRegion></affiliation></author><author><name sortKey="Tapia, Paz" sort="Tapia, Paz" uniqKey="Tapia P" first="Paz" last="Tapia">Paz Tapia</name><affiliation wicri:level="1"><nlm:affiliation>Molecular Genetics Sub Department, Institute of Public Health of Chile, Santiago, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Molecular Genetics Sub Department, Institute of Public Health of Chile, Santiago</wicri:regionArea><wicri:noRegion>Santiago</wicri:noRegion></affiliation></author><author><name sortKey="Acevedo, Alejandra" sort="Acevedo, Alejandra" uniqKey="Acevedo A" first="Alejandra" last="Acevedo">Alejandra Acevedo</name><affiliation wicri:level="1"><nlm:affiliation>Section of Respiratory and Exanthematic Viruses, Institute of Public Health of Chile, Santiago, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Section of Respiratory and Exanthematic Viruses, Institute of Public Health of Chile, Santiago</wicri:regionArea><wicri:noRegion>Santiago</wicri:noRegion></affiliation></author><author><name sortKey="Lagos, Jaime" sort="Lagos, Jaime" uniqKey="Lagos J" first="Jaime" last="Lagos">Jaime Lagos</name><affiliation wicri:level="1"><nlm:affiliation>Molecular Genetics Sub Department, Institute of Public Health of Chile, Santiago, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Molecular Genetics Sub Department, Institute of Public Health of Chile, Santiago</wicri:regionArea><wicri:noRegion>Santiago</wicri:noRegion></affiliation></author><author><name sortKey="Andrade, Winston" sort="Andrade, Winston" uniqKey="Andrade W" first="Winston" last="Andrade">Winston Andrade</name><affiliation wicri:level="1"><nlm:affiliation>Section of Respiratory and Exanthematic Viruses, Institute of Public Health of Chile, Santiago, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Section of Respiratory and Exanthematic Viruses, Institute of Public Health of Chile, Santiago</wicri:regionArea><wicri:noRegion>Santiago</wicri:noRegion></affiliation></author><author><name sortKey="Arata, Loredana" sort="Arata, Loredana" uniqKey="Arata L" first="Loredana" last="Arata">Loredana Arata</name><affiliation wicri:level="1"><nlm:affiliation>Molecular Genetics Sub Department, Institute of Public Health of Chile, Santiago, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Molecular Genetics Sub Department, Institute of Public Health of Chile, Santiago</wicri:regionArea><wicri:noRegion>Santiago</wicri:noRegion></affiliation></author><author><name sortKey="Leal, Gabriel" sort="Leal, Gabriel" uniqKey="Leal G" first="Gabriel" last="Leal">Gabriel Leal</name><affiliation wicri:level="1"><nlm:affiliation>Section of Respiratory and Exanthematic Viruses, Institute of Public Health of Chile, Santiago, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Section of Respiratory and Exanthematic Viruses, Institute of Public Health of Chile, Santiago</wicri:regionArea><wicri:noRegion>Santiago</wicri:noRegion></affiliation></author><author><name sortKey="Barra, Gisselle" sort="Barra, Gisselle" uniqKey="Barra G" first="Gisselle" last="Barra">Gisselle Barra</name><affiliation wicri:level="1"><nlm:affiliation>Molecular Genetics Sub Department, Institute of Public Health of Chile, Santiago, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Molecular Genetics Sub Department, Institute of Public Health of Chile, Santiago</wicri:regionArea><wicri:noRegion>Santiago</wicri:noRegion></affiliation></author><author><name sortKey="Tambley, Carolina" sort="Tambley, Carolina" uniqKey="Tambley C" first="Carolina" last="Tambley">Carolina Tambley</name><affiliation wicri:level="1"><nlm:affiliation>Section of Respiratory and Exanthematic Viruses, Institute of Public Health of Chile, Santiago, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Section of Respiratory and Exanthematic Viruses, Institute of Public Health of Chile, Santiago</wicri:regionArea><wicri:noRegion>Santiago</wicri:noRegion></affiliation></author><author><name sortKey="Tognarelli, Javier" sort="Tognarelli, Javier" uniqKey="Tognarelli J" first="Javier" last="Tognarelli">Javier Tognarelli</name><affiliation wicri:level="1"><nlm:affiliation>Molecular Genetics Sub Department, Institute of Public Health of Chile, Santiago, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Molecular Genetics Sub Department, Institute of Public Health of Chile, Santiago</wicri:regionArea><wicri:noRegion>Santiago</wicri:noRegion></affiliation></author><author><name sortKey="Bustos, Patricia" sort="Bustos, Patricia" uniqKey="Bustos P" first="Patricia" last="Bustos">Patricia Bustos</name><affiliation wicri:level="1"><nlm:affiliation>Section of Respiratory and Exanthematic Viruses, Institute of Public Health of Chile, Santiago, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Section of Respiratory and Exanthematic Viruses, Institute of Public Health of Chile, Santiago</wicri:regionArea><wicri:noRegion>Santiago</wicri:noRegion></affiliation></author><author><name sortKey="Ulloa, Soledad" sort="Ulloa, Soledad" uniqKey="Ulloa S" first="Soledad" last="Ulloa">Soledad Ulloa</name><affiliation wicri:level="1"><nlm:affiliation>Molecular Genetics Sub Department, Institute of Public Health of Chile, Santiago, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Molecular Genetics Sub Department, Institute of Public Health of Chile, Santiago</wicri:regionArea><wicri:noRegion>Santiago</wicri:noRegion></affiliation></author><author><name sortKey="Fasce, Rodrigo" sort="Fasce, Rodrigo" uniqKey="Fasce R" first="Rodrigo" last="Fasce">Rodrigo Fasce</name><affiliation wicri:level="1"><nlm:affiliation>Section of Respiratory and Exanthematic Viruses, Institute of Public Health of Chile, Santiago, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Section of Respiratory and Exanthematic Viruses, Institute of Public Health of Chile, Santiago</wicri:regionArea><wicri:noRegion>Santiago</wicri:noRegion></affiliation></author><author><name sortKey="Fernandez, Jorge" sort="Fernandez, Jorge" uniqKey="Fernandez J" first="Jorge" last="Fernández">Jorge Fernández</name><affiliation wicri:level="1"><nlm:affiliation>Molecular Genetics Sub Department, Institute of Public Health of Chile, Santiago, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Molecular Genetics Sub Department, Institute of Public Health of Chile, Santiago</wicri:regionArea><wicri:noRegion>Santiago</wicri:noRegion></affiliation></author></analytic><series><title level="j">Journal of medical virology</title><idno type="eISSN">1096-9071</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The current pandemic caused by the new coronavirus is a worldwide public health concern. To aboard this emergency, and like never before, scientific groups around the world have been working in a fast and coordinated way to get the maximum of information about this virus when it has been almost 3 months since the first cases were detected in Wuhan province in China. The complete genome sequences of around 450 isolates are available, and studies about similarities and differences among them and with the close related viruses that caused similar epidemics in this century. In this work, we studied the complete genome of the first four cases of the new coronavirus disease in Chile, from patients who traveled to Europe and Southeast Asia. Our findings reveal at least two different viral variants entries to Chilean territory, coming from Europe and Asia. We also sub-classified the isolates into variants according to punctual mutations in the genome. Our work contributes to global information about transmission dynamics and the importance to take control measures to stop the spread of the infection.</div></front></TEI><affiliations><list><country><li>Chili</li></country></list><tree><country name="Chili"><noRegion><name sortKey="Castillo, Andres E" sort="Castillo, Andres E" uniqKey="Castillo A" first="Andrés E" last="Castillo">Andrés E. Castillo</name></noRegion><name sortKey="Acevedo, Alejandra" sort="Acevedo, Alejandra" uniqKey="Acevedo A" first="Alejandra" last="Acevedo">Alejandra Acevedo</name><name sortKey="Andrade, Winston" sort="Andrade, Winston" uniqKey="Andrade W" first="Winston" last="Andrade">Winston Andrade</name><name sortKey="Arata, Loredana" sort="Arata, Loredana" uniqKey="Arata L" first="Loredana" last="Arata">Loredana Arata</name><name sortKey="Barra, Gisselle" sort="Barra, Gisselle" uniqKey="Barra G" first="Gisselle" last="Barra">Gisselle Barra</name><name sortKey="Bustos, Patricia" sort="Bustos, Patricia" uniqKey="Bustos P" first="Patricia" last="Bustos">Patricia Bustos</name><name sortKey="Fasce, Rodrigo" sort="Fasce, Rodrigo" uniqKey="Fasce R" first="Rodrigo" last="Fasce">Rodrigo Fasce</name><name sortKey="Fernandez, Jorge" sort="Fernandez, Jorge" uniqKey="Fernandez J" first="Jorge" last="Fernández">Jorge Fernández</name><name sortKey="Lagos, Jaime" sort="Lagos, Jaime" uniqKey="Lagos J" first="Jaime" last="Lagos">Jaime Lagos</name><name sortKey="Leal, Gabriel" sort="Leal, Gabriel" uniqKey="Leal G" first="Gabriel" last="Leal">Gabriel Leal</name><name sortKey="Parra, Barbara" sort="Parra, Barbara" uniqKey="Parra B" first="Bárbara" last="Parra">Bárbara Parra</name><name sortKey="Tambley, Carolina" sort="Tambley, Carolina" uniqKey="Tambley C" first="Carolina" last="Tambley">Carolina Tambley</name><name sortKey="Tapia, Paz" sort="Tapia, Paz" uniqKey="Tapia P" first="Paz" last="Tapia">Paz Tapia</name><name sortKey="Tognarelli, Javier" sort="Tognarelli, Javier" uniqKey="Tognarelli J" first="Javier" last="Tognarelli">Javier Tognarelli</name><name sortKey="Ulloa, Soledad" sort="Ulloa, Soledad" uniqKey="Ulloa S" first="Soledad" last="Ulloa">Soledad Ulloa</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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